SE3550001

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6219
  • Mimulus guttatus
  • SE3550001
  • PIF/harbinger
  • To1
  • scaffold_9:11524543-11524825
  • TAA
  • AGGTGGTGTTTGCAAAGGCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                G    ATTTAAAGCAGAAG      -   G G    -  GTTGGAATTAAGTGCTTATTACTAAAAGTTGGGGGTGTTTGCAAATTAGCTGGAAAATCAACTAAAATAGAAAAAGCAGGTACGTAGGTGCTT
  AGGTGGTGTTTGCAAA GCTT              TTAGTG ATT C AGTT AA                                                                                             
  |||||||||||||||| ||||              |||||| ||| | |||| ||                                                                                              
  TCCACCACAAACGTTT CGAA              ATCTTT TCT A ATAC CG                                                                                             
AA                A    -------------A      A   - -    T  AAAAAAGACGTGTATTAGACAAAAATCAACAAACCTTTTGTTTGAAAACGAAAACGAAGAGAATTTTATTCGACGAAATTCGATACTAAAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3