SE3520002

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6220
  • Mimulus guttatus
  • SE3520002
  • Mutator
  • M1
  • scaffold_7:3224343-3224596
  • CAATAATAT
  • ATAATATAGGTTTTATTGCAATTAGTACCCAGTGTTATATTGAATTCCTAAAAAACTACCCGATGTTATTTTATTTGCAAAAACCCTCTGTGTTTCATTTTTTTTAGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
CA   A   A  -T                   -A     A         C      A       -G          -   T           -     -   C             CACGACCC  TAA
  ATA TAT GG  TTTATTGCAATTAGTACCC  GTGTT TATTGAATT CTAAAA ACTACCC  ATGTTATTTT ATT GCAAAAACCCT CTGTG TTT ATTTTTTTTAGCA        CC   
  ||| ||| ||  |||||||||||||||||||  ||||| ||||||||| |||||| |||||||  |||||||||| ||| ||||||||||| ||||| ||| |||||||||||||        ||   A
  TAT ATA CC  AAATAACGTTAATCATGGG  CACAA ATAGCTTAA GATTTT TGATGGG  TACAATAAAA TAA CGTTTTTGGGA GATAC AAA TAAAAAAAATCGT        GG   
 A   A   A  TC                   AA     A         C      C       GG          A   C           A     T   T             TAATCATA  TAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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