SE3550004

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6222
  • Mimulus guttatus
  • SE3550004
  • PIF/harbinger
  • To2
  • scaffold_6:17303188-17303406
  • TCA
  • AGGCCTCGTTTGGTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TC                -------G     TTAGTCATTATTAACTAAATAATTGGACTTTGTTTGATGTTTGGTAATCCCAATAACTTACCAGGTCGACCTGCAAATATTA
  AGGCCTCGTTTGGTTG        GGTGA                                                                                  
  ||||||||||||||||        |||||                                                                                   
  TCCGGAGCAAACCAAC        TCTAA                                                                                  
AC                GGTTCTAT     TTTATTAGATTACTTTTGGGTTAATAAAATAGCCTGCAGGTTGTTTTTTTGGGAGATTTTCCGTTCTATTTGGTACTATTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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