SE3530006

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6224
  • Mimulus guttatus
  • SE3530006
  • hAT
  • Hat1
  • scaffold_10:747416-747979
  • GTTATGAG
  • TTATGAGTAGGGATGGCA

Secondary structure and sequence

TSD    TIR
5'



3'
G      G           --A   - ACCCGAACCGGTAGCTATCCGCGGGTATCCGCTCCGTTTAAAACCCGTTACCGAAACCATTAGGGTTTGGTAATGGTTTTGGTAAGAGAAAAGAAAACCGTCATGGTTTTGGTATGGTTCTGGTTTTACCTTCACGGTCATGGGTACCCGACCATTTAATATATATATATATATATATATATATATATATATATATATATATTCAACAAAATATGAATAAAAAAGATATTTTGGCAAAATTTTAAATAAAGTATTA
 TTATGA TAGGGATGGCA   AAA A                                                                                                                                                                                                                                                                
 |||||| |||||||||||   ||| |                                                                                                                                                                                                                                                                A
 AGTATT ATCCCTACCGT   CTC C                                                                                                                                                                                                                                                                
G      G           CGC   G CCATGGGAGCTTTTTCACGTTATGGTCTTGGTAATGGTAAATTATATCGAGTTTGGTACTGGTATGGTTTGGGTAAATTTTTCAAGTACCTTTTTGGTCTTGGTAATGGCGCTTATAGGCCCATGGGTGCCCATGGGTAAATGGTAAATTTAATGCCATTATTTTTTATTGAAACCCAGGCTATTGCAAATTCATTGAGAGTCTTTTCTCCTTCTTTTTTTCTTTTCTCTTTTTTTTATATAGGAGGGATTTAATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End