SE3550007

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6225
  • Mimulus guttatus
  • SE3550007
  • PIF/harbinger
  • To3
  • scaffold_14:13366055-13366468
  • TAA
  • AGAGCAACTCCAATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                TA       AAAA   A    TAAACCATTAATTGATGCTTGAAATAATACTTTGGTACTTCGAAAAAACTTATATGCTCCAATCCGTAGGAATCAAATAAATTATTTTATTTTTAAAAATGTATTAAACATAAATTAATAGATATATTTGGTCCCTATTCCATAGGAAATTGTTAGAAAAATTATTCTTTT
  AGAGCAACTCCAATGG  GGTATTA    GAG CATC                                                                                                                                                                           
  ||||||||||||||||  |||||||    ||| ||||                                                                                                                                                                           T
  TCTCGTTGAGGTTACC  CCCTTAG    TTT ACCT                                                                                                                                                                           
AA                --       ----   -    CATAATTTACTATTTTGAAGGTAAAACTAAGGGTTTTGAGTTTTAAAGAAGAGGTTGCCTTCGTGGTTTCCCCATCAAAAAAACTATGAAATAGAGGATCTCCACGTATTTACGTGGGTTTTTTTGGTTCATAGTTTATAAGGATCTTTAATCCTTGACGTTAAAGTTGCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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