SE3520009

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6227
  • Mimulus guttatus
  • SE3520009
  • Mutator
  • M4
  • scaffold_14:8153179-8153696
  • TAAAATTTA
  • TAAAATTTAGGGTAAATTTCACTTTCCACT

Secondary structure and sequence

TSD    TIR
5'



3'
    A          A           A  ATTT      A -                   C                             CC  C   A     T     A      A        TG    CTGTC    A      C         T         AC   -             C      T T                   TAA        A         TAAAAT   TAA  CGA  A   AAC
TAAA TTTAGGGTAA TTTCACTTTCC CT    TACTTT G TTTGGTATCACTTTATCCC TTTTACTCTTGATTGCATCGATTTGCCCC  TG ACT GAAAG TTGTC CAATGT GCCCTCGT  TTAG     AGAC TTTGAC TTAACACCG TTGATCTAA  TCT GAAATTACAAAAA ACCACC C CTCAGTTTAAATAATTATT   AAAAAAAT AAAAAATAA      GTT   TG   CG GAA   
|||| |||||||||| ||||||||||| ||    |||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||  || ||| ||||| ||||| |||||| ||||||||  ||||     |||| |||||| ||||||||| |||||||||  ||| ||||||||||||| |||||| | |||||||||||||||||||   |||||||| |||||||||      |||   ||   || |||   A
ATTT AAATCCCATT AAAGTGAAAGG GG    ATGAAA C GAACTATAGTGAAATGGGG AAGATGAGAGCTAACGTAGCTAAACGGGG  AC TGA CTTTC AATAG GTTACA CGGGAGCG  AATC     TCTG AAACTG AATTGTGGC AACTAGATT  AGA TTTTAATGTTTTT TGGTGG G GGGTCAAATTTATTAATAA   TTTTTTTA TTTTTTATT      CAA   AC   GC CTT   
    A          -           -  -AAC      - T                   A                             AC  A   A     C     A      C        TA    AAAAT    G      C         C         -C   A             T      C C                   ---        A         TAAAAC   -CC  --A  A   GAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End