SE3520014

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6232
  • Mimulus guttatus
  • SE3520014
  • Mutator
  • M7
  • scaffold_7:17380458-17380981
  • ATATATATA
  • ATATATATAGGGCAAATTGCACTTCG

Secondary structure and sequence

TSD    TIR
5'



3' 
         A                 -------      CAAAATAGAATAATGAGACTCTCCCCCTTCGAAATATATGACGCGATGCACTTTGCCCCAAATGTGTATTTTCGAGCTAATTGTTGTCGGATTTGAGTAAATTGGAAGGGTAATTTCGTCTTTTAACGCTTTAAATGTCATGTGCCCTTTTTTCACCCTACATTACAATGATTACGAAGAACAAAGAACAAATTTTGTCGAATTTGGACGAAAACTTTGTTTAATT
 ATATATAT GGGCAAATTGCACTTCG       GCCCCT                                                                                                                                                                                                                                  
 |||||||| |||||||||||||||||       ||||||                                                                                                                                                                                                                                  T
 TATATATA CCTGTTTAACGTGAAGT       TTTTTT                                                                                                                                                                                                                                  
A        -                 GGGGGAA      AAGGAGAAAACGTGAAAGTGGGGAGTTTTATGTTTTTACTCTGACGGGGGAAGCTTTATATATTGAGCCACGTGAAACGGGGTTTATACATAAAAGCCAGGTTAAGAGTGGCTTACTTCCCACATAAACAGTAAAATGTAGAAGGCGAACTCTTAGGAGGAAAGTCTCAATAAATCCCAAGGGTTTAATTGTTTTAAAAGAAAGGTTTAACTACTTTAAGCGAAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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