SE3520015

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6233
  • Mimulus guttatus
  • SE3520015
  • Mutator
  • M8
  • scaffold_14:14936178-14936640
  • TTAGCATCA
  • GC

Secondary structure and sequence

TSD    TIR
5'



3'
  TTA  ATCAT                -               C  T         A  G  -                   T                 TTT           T         A    G       CAACAT    A  T     T          GC  TAG   G    C  ----  AAAAATACAGTTTCTGATGCACCACAATCTGATATATACAAGCCAA
     GC     GGGTAAATTACAACCA CCCCTGAGGTATGGT AA TTACGAAAA AC CC TCTTGTTTGGGTAATTACA CTACCCCTCAACTATGA   TTTTCTTACAT TCCACCCTT TGGT TCAAATT      AATC TC AGATT TGTGGAATGT  TC   TTT TACT GT    GT                                              
     ||     |||||||||||||||| ||||||||||||||| || ||||||||| || || ||||||||||||||||||| |||||||||||||||||   ||||||||||| ||||||||| |||| |||||||      |||| || ||||| ||||||||||  ||   ||| |||| ||    ||                                               
     CG     CCCATTTAATGTTGGT GGGGACTCCATACCA TT AATGTTTTT TG GG AGAACAAACCCATTAATGT GGTGGGGAGTTGATATT   AGAAGAATGTG AGGTGGGAA GCCA AGTTTAA      TTAG AG TTTAA ATACTTTATA  AG   AAA ATGG CA    AG                                              
TATTA  --ATT                T               A  T         G  -  T                   T                 --T           C         C    A       ATCACC    A  C     T          AT  TGA   G    A  AAAT  AGTAAGCTTGAGGTGTAAAACTTCATTCTACTAGTATTACACAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End