Plant MITE

SE3520017

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6235
Mimulus guttatus
SE3520017
Mutator
M9
scaffold_4:15034061-15034395
ATAACAATG
GGAAATTTACAGTTTT

Secondary structure and sequence

TSD TIR

5'

3'

ATAACAATGAG     TT         CATC                                CC                                   A               C  C   C      C   ----------------------TTTA  GTTACTCCGTCAGTTAA
           GGAAA  TACAGTTTT    CCTCAAGTTTGCGCTGATTTCACATTTGGTCC  CATGTTTACAAAAAACACATTTGGTCCCTCATGTT CAATAATTTAACACT TT GTC TTTTCG CAA                          CC                 
           |||||  |||||||||    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||| |||||| |||                          ||                  
           CCTTT  ATGTCAAAA    GGAGTTCAAACGTGGCTAAAGTGTAAACCAGG  GTACAAATGTTTTTTGTGTAAACCAGGGAGTACAA GTTATTAAGTTGTGA AA CAG AAAGGC GTT                          CG                 
AGTAACAATAG     TT         CAAA                                -A                                   A               A  T   T      A   CAAAAGCAAACATGATTACCTTAGTT  CACACGGGTAGTGACGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520017

ATAACAATGAGGGAAATTTACAGTTTTCATCCCTCAAGTTTGCGCTGATTTCACATTTGGTCCCCCATGTTTACAAAAAACACATTTGGTCCCTCATGTTACAATAATTTAACACTCTTCGTCCTTTTCGCCAATTTACCGTTACTCCGTCAGTTAAGGCAGTGATGGGCACACGCTTGATTCCATTAGTACAAACGAAAACTTGACGGAAATGACTAAAAGTGTTGAATTATTGAAACATGAGGGACCAAATGTGTTTTTTGTAAACATGAGGACCAAATGTGAAATCGGTGCAAACTTGAGGAAACAAAACTGTATTTTTCCGATAACAATGA

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