SE3540018

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6236
  • Mimulus guttatus
  • SE3540018
  • CACTA
  • Ca1
  • scaffold_8:8907455-8907748
  • ACA
  • CACTAGTAGAAAAATGGCTTTTTACTACGA

Secondary structure and sequence

TSD    TIR
5'



3' 
ACA             ATG    T         TCATTAAC         A    T -   TT G ACTAAAAAGGCTTTTGCTACACATTTGCTACGAATTTGCCCCGTAGCATATACGGGCGTGACAAGAGCTTTGCTACGGTAAATGG
   CACTAGTAGAAAA   GCTT TTACTACGA        CGTAGCAAA GGTA C AAA  C T                                                                                     
   |||||||||||||   |||| |||||||||        ||||||||| |||| | |||  | |                                                                                     C
   GTGATCATCTTTT   CGAA AATGATGCT        AAACGATGC CATT T TTG  G C                                                                                     
ACA             AAA    T         ---TTAAA         -    - T   -- - ATTATTTTACATGAAAAATGATGCCTTGTTAAAACTTCAGCATCATTTATGATCCTAAATGGCATCGTTTTTTCATGAAACATGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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