SE3530023

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6241
  • Mimulus guttatus
  • SE3530023
  • hAT
  • Hat2
  • scaffold_2:7717023-7717279
  • TACACAAG
  • GCAGGGGCGTACCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TACACAA         T     ------------------------------------------------C   TAAGGCTGGGGTGGCCCCCGCCCCCCCAAGAATTTTTTTTTAAGCTGTTTGTTTTTTTTTTTTTTTTTTTTTTTTGGG
       GCAGGGGCG ACCCA                                                 GCC                                                                              
       ||||||||| |||||                                                 |||                                                                              T
       TGTCCCCGC TGGGT                                                 AAA                                                                              
GAACACA         C     CCCCACAAAAGAACCCCCCCGCCTTTATATCCCCATTTAATTCTCTCTT   AAAAAAAAAAAAAATCCCTGATTTTACATGTTTTAATTTTCAAACCCCCCCGCTTTCACATATTTGATTATGTATTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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