Plant MITE

SE3520024

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6242
Mimulus guttatus
SE3520024
Mutator
M10
scaffold_3:982232-982430
CAAGGAAAA
GG

Secondary structure and sequence

TSD TIR

5'

3'

     CAA  AAAA     ATT T       A      GAATATAACCAGGCACCCTAATTAATAAGATTCCCACTACGGGTTCAGTTATGGCCCAATGGATTTT
        GG    GGGAA   C ATGCTAC CCTGGT                                                                   
        ||    |||||   | ||||||| ||||||                                                                    
        CC    CCCTT   G TACGATG TGGGCC                                                                   
AAAAGGAA  ----     -AT C       -      ACTAAAAGTGGCCCACCGAGAAAAGAACTGTACACAGGAAAAAATAGATAAAATATTAATATAAAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520024

CAAGGAAAAGGGAAATTCTATGCTACACCTGGTGAATATAACCAGGCACCCTAATTAATAAGATTCCCACTACGGGTTCAGTTATGGCCCAATGGATTTTAGAAATATAATTATAAAATAGATAAAAAAGGACACATGTCAAGAAAAGAGCCACCCGGTGAAAATCACCGGGTGTAGCATCGTATTCCCCCAAGGAAAA

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