SE3550025

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6243
  • Mimulus guttatus
  • SE3550025
  • PIF/harbinger
  • To5
  • scaffold_12:620609-620978
  • CTT
  • GGCAATGTTTGGAACCGTTTTTATTTTGTTTTCATT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTT              C   ------          T       ------------------GTTTC    AAACAAAATGGGATTTATTACACTTTTCAAATCATTTCTCAAAACAATTTCAAAAGTTTCTCTCTCCTTCAGACATGATGTGACTGCTACAGTAAAAAATGTCTTCACTAAAAAACAAATAAACA
   GGCAATGTTTGGAA CGT      TTTTATTTTG TTTCATT                       CCCA                                                                                                                             
   |||||||||||||| |||      |||||||||| |||||||                       ||||                                                                                                                              
   CCGTTACAAACCTT GCA      AGAATAAAAC AAAGTAA                       TATT                                                                                                                             
TTC              C   AAACCT          T       AACTCCTTTATACAAAACCCCCT    AAACTCTTACTTTCATTACAAACAAACATAAAACCTTCCTCTGTTTTATGTGACATCGTTAGTTTAGTACAAATTTCCACAATCTTTTTCCATAAAAACTTCTTTTTTTAACTTTCCACTTCACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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