Plant MITE

SE3520029

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6247
Mimulus guttatus
SE3520029
Mutator
M6
scaffold_8:8051417-8051588
CTTGAAATA
GGCTTTTGAGATCCTACACCGGGTGAAATACACCGGGTAGATCTTTACC

Secondary structure and sequence

TSD TIR

5'

3'

CTTGAAATAC  C     -AG          G      --A          A   -C      ATTCATA      CAAACACACACAC   CAC
          GG TTTTG   ATCCTACACC GGTGAA   TACACCGGGT GAT  TTTACC       TACACA             ACC   
          || |||||   |||||||||| ||||||   |||||||||| |||  ||||||       ||||||             |||    
          CC AAAAT   TAGGATGTGG CCACTT   ATGTGGCCCA CTA  AAATGG       ATGTGT             TGG   
 CATAAAGTT  C     AGA          G      CCA          -   AA      CAACTAG      ------------A   TTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520029

CTTGAAATACGGCTTTTGAGATCCTACACCGGGTGAAATACACCGGGTAGATCTTTACCATTCATATACACACAAACACACACACACCCACATTGGTATGTGTAGATCAACGGTAAAAAATCACCCGGTGTAACCTTCACCGGGTGTAGGATAGATAAAACCCTTGAAATAC

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