SE3530031

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6249
  • Mimulus guttatus
  • SE3530031
  • hAT
  • Hat3
  • scaffold_12:3769557-3770282
  • ATTTATAG
  • TATAGTAGGGCTGGGACTGGGTTGG

Secondary structure and sequence

TSD    TIR
5'



3'
ATT     --                    ------TTTTT       ----   -          --   A  A ------ TTTTTAGGCGGATAATCAATTTTTAACCGACCCATTGGATCGGGTCGAAAATTTCAACCAACCCATCTATAATGGGTTGGTTGGTGGTTTCTAATATTACCAAAAGTTGGTTGACCGATAATTATCGGTCATCCAACTATACTATTAAAATTTTATTAAAAATATAAAATAAAGGCCGTATTTTCTCAAGTGGTTATTGAAATTATCAAAATAATTAGTATTCTAAATTTTAAAACAATCAACAACGGAAAAAAAATGACCTAAATCTTCAACCAGTTTCTTTTGCCCAAGC
   TATAG  TAGGGCTGGGACTGGGTTGG           AACCACC    AAC CGACCCATTA  CCG CC T      A                                                                                                                                                                                                                                                                                                    
   |||||  ||||||||||||||||||||           |||||||    ||| ||||||||||  ||| || |      |                                                                                                                                                                                                                                                                                                    T
   ATATT  ATCCCGACCCTGACCCAACC           TGGTCGG    TTG CTGGGTAGGC  TTT GG T      G                                                                                                                                                                                                                                                                                                    
  G     TA                    CAGCCAGCTAA       ATTT   A          AG   -  - AAAAAC AGTTTAAACTTTTGGCAACGGCTGGGTTGGAAACACCCAGCCAACTACCAACCGTTGTCTTATAAACCAAAGCCTTACCCAGCCAACTACCAAATATGGGCGATGGATCAAATGAATTTTTTTATATTAAAACCTCATTTTTATAGGTTTAAAACGCATTACCGTGCCACGCTAGTAGTAAATAGTCAAGTTTTATTAATTATTATTAAATTGCTTTTTTATATTAATCCTTTAAGTTTCATTAAAGTTTGTACGTGTTCGCTAAATTATTTAAAACACTCCAAAAACAAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End