SE3550033

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6251
  • Mimulus guttatus
  • SE3550033
  • PIF/harbinger
  • To6
  • scaffold_13:6322246-6322642
  • TAA
  • AGGTCTCGTTTGCTTACCTATATTATATTAGAT

Secondary structure and sequence

TSD    TIR
5'



3'
TA               AC    -    TA      -----------   A  ---      C  -------C   TTA CTAATTTATTAGTTACTAATATGTTTGGTTCTTTAGATTACATGTATTAAATTTGTTAAATTTTGTTATTTTATATAAATTGTCTATAAAGTCTTTTATTTAACAAAATTACATTATTATTTAAAGGATAAA
  AGGTCTCGTTTGCTT  CTAT ATTA  TTAGAT           CGA TT   AATTTC TA        TGG   A                                                                                                                                    
  |||||||||||||||  |||| ||||  ||||||           ||| ||   |||||| ||        |||   |                                                                                                                                    T
  TCCGGAGCAAACGAA  GATG TAAT  AATCTA           TTC CT   TATTCA TT        CAA   C                                                                                                                                    
AA               -C    A    CC      ATTGATTTATC   -  TAA      -  CTATAAAC   --- CATCCTAAGTTGTAATGAGTGCAGGCAATGATTTCAAGTTCGGGCGTTAATTCACGATGATGCAGTACTTTAATCATTGTGTGGAGAGGGACGCTAATTAAAGCATACCCACTGATTTTGCTTTTTAATGTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End