Plant MITE

SE3520034

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6252
Mimulus guttatus
SE3520034
Mutator
M2
scaffold_12:8238213-8238567
TAAAAAGTA
TAGGGCAAATTACGGCCACCCCTGAGTTATGGTCAAATTACGAAAACCCCCTCCTGTTTGGGTAATTACAACCACCCCCTC

Secondary structure and sequence

TSD TIR

5'

3'

TAAAAAG                          T                   --C      C                A          -----------AA  A    TTATCTTACGAAGAAACCCCTCTATAGGTAAATTTAGGGATGTTATATCGGTAAAACCGAACCAAAATTTCGGT
       TAGGGCAAATTACGGCCACCCCTGAG TATGGTCAAATTACGAAAA   CCCCTC TGTTTGGGTAATTACA CCACCCCCTC             CT TGTA                                                                          
       |||||||||||||||||||||||||| |||||||||||||||||||   |||||| |||||||||||||||| ||||||||||             || ||||                                                                          A
       ATCCCGTTTAATGTCGGTGGGGACTC ATACCAGTTTAATGCTTTT   GGGGAG ACGAACCCATTAATGT GGTGGGGGAG             AA TGTA                                                                          
ATGAAAA                          C                   TTT      A                C          AAAAATTTATAAA  -    TTTTAAATACATTAAGCCAATAAATAGCTTGGTTTAGCATATAAGTCAAGCCATTTGTCATACTTTACAACCGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520034

TAAAAAGTAGGGCAAATTACGGCCACCCCTGAGTTATGGTCAAATTACGAAAACCCCCTCCTGTTTGGGTAATTACAACCACCCCCTCAACTATGTATTATCTTACGAAGAAACCCCTCTATAGGTAAATTTAGGGATGTTATATCGGTAAAACCGAACCAAAATTTCGGTACGCCAACATTTCATACTGTTTACCGAACTGAATATACGATTTGGTTCGATAAATAACCGAATTACATAAATTTTATGTAAAAATATTTAAAAAGAGGGGGTGGCTGTAATTACCCAAGCAAGAGGGGTTTTTTTCGTAATTTGACCATACCTCAGGGGTGGCTGTAATTTGCCCTAAAAAGTA

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