SE3520035

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6253
  • Mimulus guttatus
  • SE3520035
  • Mutator
  • M4
  • scaffold_10:15262022-15262776
  • TAAATTTTA
  • TAAATTTTAGGGTAAATTCTACTTTCCTCCCTTGTACTTTGGTTCGATCTCACTTTATCCCATTCTACTCCCAATAACATCAATTTGCCCCCTTGTACTTTGGCTCAATATCACTTTACCCCCTTCTACTTTCAATTGCATCGATTT

Secondary structure and sequence

TSD    TIR
5'



3'
    T                      T                    C         C C   C     C    AA    A        CC         -     A                  C                     GCAA    G      A             --      CA                        -                                  -                 C  A      A                        A      CA    -  A            A  TATAATTATT       TT         ---TGT   -T    T  T   CTA
TAAA TTTAGGGTAAATTCTACTTTCC CCCTTGTACTTTGGTTCGAT TCACTTTAT C ATT TACTC CAAT  CATC ATTTGCCC  TTGTACTTT GGCTC ATATCACTTTACCCCCTT TACTTTCAATTGCATCGATTT    CCTT TACTTT GTTCGATATCACT  ATACCC  TTCTACTCTCAATTGCATCGATTT TCCCCTTGTACTTGAAAAGTTGTCTCAATGTGGC ATCATTGTTAGTTTTCA AC TTTGAC TTAACATTGTTTGATCTAAGTTTG AAATTA  AAAA GT ACCCCTCCCAGT TA          AAAAAAA  AAAAAAAAT      GGC  GGCG CG GGA   
|||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||| | ||| ||||| ||||  |||| ||||||||  ||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||    |||| |||||| |||||||||||||  ||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| |||||||||||||||||||||||| ||||||  |||| || |||||||||||| ||          |||||||  |||||||||      |||  |||| || |||   T
ATTT AAATCCCATTTAAGGTGAAAGG GGGAACATGAAACTGGGCTA AGTGAAATG G TAA ATGAG GTTA  GTAG TAAATGGG  AACATGAAA CCGAG TATAGTGAAATGGGGGAA ATGAGAGTTGACGTAGCTAAA    GGAA ATGAAA CGAGCTATAGTGA  TATGGG  AAGATGAGAGTTAACGTAGCTAAA GGGGGGACATGAACTTTTTAACAGAGTTACACCG TAGTGGCAATCAAAAGT TG AAACTG AATTGTGGCAAACTAGATTCAAAC TTTAAT  TTTT CG TGGGGAGGGTCA AT          TTTTTTT  TTTTTTTTG      TCG  TTGT GC CTT   
    T                      -                    T         A A   A     A    AC    C        -A         A     C                  T                     AAGG    A      C             AA      --                        C                                  G                 C  G      G                        C      AA    A  G            A  TTTTTTTGTT       TT         TTTTTT   TT    T  T   TTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End