SE3520038

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6256
  • Mimulus guttatus
  • SE3520038
  • Mutator
  • M8
  • scaffold_11:19882444-19882908
  • TTCTATTTA
  • AGGGTAAATTACAACCACCCCTGAGGTATGGTCAAATTACGAAAACCACCCTCTTGTTTGGGTAATTACAACCACCTTCAACTATAAATCTTCTTACACGTCCACCCTTGAGGTTTCAAATTTAGTGGAATCTTCTAGATTATATGAAATATTCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCTATTT                   -                          CC     C                 A -CA           A      C     - G  -        A   T          TGG    T        ATA  A   A     AATTTTCG  C      ATCCCA    AGCCTCACATTTTGAAGTTAGATGATCATAAGATGTATTTTT
        AGGGTAAATTACAACCACC CCTGAGGTATGGTCAAATTACGAAAA  ACCCT TTGTTTGGGTAATTACA C   CCTTCAACTAT AATCTT TTACA C TC CACCCTTG GGT TCAAATTTAG   AATC TCTAGATT   TG AAT TTCTC        AC CGTTTT      TTCG                                          
        ||||||||||||||||||| ||||||||||||||||||||||||||  ||||| ||||||||||||||||| |   ||||||||||| |||||| ||||| | || |||||||| ||| ||||||||||   |||| ||||||||   || ||| |||||        || ||||||      ||||                                          G
        TCCCATTTAATGTTGGTGG GGACTCCATACCAGTTTAATGCTTTT  TGGGA GACAAACCTATTAATGT G   GGGAGTTGATA TTAGAA AATGT G GG GTGGGAAT CCA AGTTTAAGTT   TTAG AGATCTAA   AC TTA AAGAG        TG GCAAAA      ACGT                                          
ATTTATCT                   A                          -T     C                 A ATG           C      A     A A  T        A   C          GTA    T        GGC  C   C     ATCAAACA  A      -----C    TTTTATGTCAAAGGCTACGTGGTGTTAGACTATATATGTTCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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