SE3520040

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6258
  • Mimulus guttatus
  • SE3520040
  • Mutator
  • M3
  • scaffold_7:3575103-3575544
  • TAATTATAT
  • TAATTATATGGGTAAATTACACCTATCCCCTGAGGTATGCTAAAATAACTTTAGGGTCCCTGCAGTATTGGTAATTACAATCAACCCCCTG

Secondary structure and sequence

TSD    TIR
5'



3'
         TAT                 CC                               C  CA      G        A   AC      AAACATT      -- A     ACGGAATAAATCATTGGAAAAGTTTTTCATTTGGGGTTCTAACGGACTATTAGTTCCAGGCAGTGGTGGGGACAACATAGAGCTAGGGGGTGACATGGCTCTCCTAACA
   TAATTA   GGGTAAATTACACCTAT  CCTGAGGTATGCTAAAATAACTTTAGGGTCC TG  GTATTG TAATTACA TCA  CCCCTG       GTTAGA  A CCCTA                                                                                                             
   ||||||   |||||||||||||||||  ||||||||||||||||||||||||||||||| ||  |||||| |||||||| |||  ||||||       ||||||  | |||||                                                                                                             T
   ATTAAT   CCCATTTAATGTGGATG  GGACTCCATACGATTTTATTGAAATTCTAGG AC  CATAAC ATTAATGT GGT  GGGGAC       ATGGCC  G GTTCT                                                                                                             
TAT      ---                 TA                               A  AC      A        C   GT      CTTATTA      TC -     AAAGTACAGGACCCCTGGCTATACGTGATATAAGCAAAGGGCGTCCCGGCCTTTAACATGCTATCTGCTTTTAGATATTTAGAATATATTTTATTATTCCTAAATTCTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End