SE3520043

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6261
  • Mimulus guttatus
  • SE3520043
  • Mutator
  • M8
  • scaffold_2:18724260-18724737
  • TTTTTTAAA
  • TTTAAACGGTACATTACGGTCACCCCCTGAGTTAATGTTAAATTACGAAATCCCCTCATGTTTGGGTAATTACAATCAACC

Secondary structure and sequence

TSD    TIR
5'



3'
TTT      --C   --AC          C        T   T              --T                           ---   CCGTCAA                                A            CAACAA         A  AC                C                G   AAAAAATGCAAT     AT  A     ATA   TATTTACAAGCCAA    CA
   TTTAAA   GGT    ATTACGGTCA CCCCTGAG TAA GTTAAATTACGAAA   CCCCTCATGTTTGGGTAATTACAATCA   ACC       TCAACTATGAATCTTCTTACACGTCCACCCTT TGGTGTCAAATT      AATCTTCTA AT  CGTGGAATGTTCTCTA TTTGTACTCGTTTTGT CCA            TTCGG  GC CCACA   TGA              GAGA  
   ||||||   |||    |||||||||| |||||||| ||| ||||||||||||||   |||||||||||||||||||||||||||   |||       |||||||||||||||||||||||||||||||| ||||||||||||      ||||||||| ||  |||||||||||||||| |||||||||||||||| |||            |||||  || |||||   |||              ||||   
   AAATTT   TCA    TAATGCCGGT GGGGACTC ATT CAATTTAATGCTTT   GGGGAGTACAAATTCATTAATGTTGGT   TGG       AGTTGATACTTAGAAGAATGTGCAGGTGGGAA ATCACAGTTTAA      TTAGAAGAT TA  GCACCTTATAAGAGGT AAACATGGGCAAAATG GGT            AAGCT  CG GGTGT   ACT              TTCT  
  C      TTT   AATT          T        C   C              TTT                           GAA   -------                                C            ATCACC         C  AT                C                G   ------------     --  A     AAA   TTATTCTACTAGAA    AC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End