SE3520044

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6262
  • Mimulus guttatus
  • SE3520044
  • Mutator
  • M12
  • scaffold_6:4852352-4853144
  • ATATATATA
  • ATATATATAGGCGGCGGATATATGCAAGCCCATTTTTTTATTAGTTCAA

Secondary structure and sequence

TSD    TIR
5'



3'
         A                   C                    G     CATTATAAAAATACTAATTTACCCTTAATGAAATTCAAAACCAAATAAAAAACATAAATCATCAAAAAAAAAAAAAATCGGCGTTACAACGCCGATTTTGACTTGTAAAGTCGGCGTTGTGTCGCCGATTTGGTTAACAAAAATCGGCATTGTGACGCCGATTTTCGAGTACAAAATCGGTCTGGATAAACCGATTTGGGAAACCTACGAAAACACACACAAAAATAAATTTCGATCTCATTTTTTTTTCAAAATCGGCTAAAGCATTGCAACCCAACAAGAAGTAAGCATAGATTAATGTTCATCCACACATATTTATCAAGAATCGATGCTCGATTAAT
 ATATATAT GGCGGCGGATATATGCAAG CCATTTTTTTATTAGTTCAA ACCTT                                                                                                                                                                                                                                                                                                                                                     
 |||||||| ||||||||||||||||||| |||||||||||||||||||| |||||                                                                                                                                                                                                                                                                                                                                                     G
 TATATATA CCGCCGCCTATATACGTTC GGTAAAAAAATAATCAAGTT GAGTG                                                                                                                                                                                                                                                                                                                                                     
A        -                   A                    G     TATTTACTCAAATAATCAAGTTCGGGCATTTAATTAAATAAAAATAATGTAGTTCTGGTTTGTACTGCTTATATGGGAATAGTTATTTATGATGGGTTTATGTTTATTTGAGATAAAAATTAAACAAGATTTGGTTTTTTATTTTTTTTTTGTTCATTTTTTTTTTGTTTTTTTTTTCTTTTTTGAGTGTTGACGGCGTTGGTCTGGCGGCTCTGTAGCTGGTCGCTCTGAAGGTGGTGCGGCCGCTGCTGGTCGCTGGGTGGGTGGTGTGGTGGGGGGTGGCGTGGTAGTGGTGGTGGTTGTTAAGAAAAAATGATTAGAAAACAAACAGTTAAGTTTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End