SE3530047

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6265
  • Mimulus guttatus
  • SE3530047
  • hAT
  • Hat4
  • scaffold_2:4397428-4398000
  • CTTACAAC
  • TAGGGATGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTACAAC           ---AT        T -----     CGG - TTTGCAATCCCCATCCCCGCCCCGCTATGGAAATCCCCATCCCCATCCCCGTAAAAAATCCCCACGGGTATTAAAAGAATCCCCATACCCGCCCCATAAAATCCCCACGGGTATCGAGGCGGGTAAAAATCCCCGTCTATTTTATTTCTTTTTTTTTTCAATTCAATAAATATGCAATTTACTTATAATTTAAAGGTTTATTTCAACAAATAAATCAATATTTAATTATAATACTAATATTTA
        TAGGGATGGCA     GGGGCGGG A     TGGGG   G T                                                                                                                                                                                                                                                   
        |||||||||||     |||||||| |     |||||   | |                                                                                                                                                                                                                                                    
        ATCCCTACCGT     TGGGCGGG G     TAGGG   G G                                                                                                                                                                                                                                                   
CAACATTC           CAAAC        - CTGCC     --- C GGGCTTTAAAAGCCCATAATGGGCGGGGCTTTTTTTTACCCCGCCCATACCCCTAACTTTAAAAAAAAACTGGCCCATGCCCATGCCCCTACCCAAACGGATATGGGCGGGGCATGGGCGGGGCGTAATAAATATATATATTATATATAAAAAAATTAAAATATAATTTATATTTATTAATTTATCATCATTATATAATTTATAATCAATTTTTACCCCTAAAAATCCAAAGGTAATATATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3