Plant MITE

SE3520048

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6266
Mimulus guttatus
SE3520048
Mutator
M13
scaffold_9:12934171-12934430
GCAAATTAA
GAGTTAATTGCATTTAGTACCCTTATGTT

Secondary structure and sequence

TSD TIR

5'

3'

 GCAAATTAA     A               CT      ATATC              TCC         CAT          TGAC  C C         T   G       -CACAA        TAGT
          GAGTT ATTGCATTTAGTACC  TATGTT     TAATTGCTAAAAAA   TCCGTGTTA   ATATTAGCAA    CC C TATAATGCG TTT TTTAGCA      CCCCTAAA    
          ||||| |||||||||||||||  ||||||     ||||||||||||||   |||||||||   ||||||||||    || | ||||||||| ||| |||||||      ||||||||    T
          CTCAA TAACGTAAGTCGTGG  ATATAA     ATTAACGATTTTTT   AGGCATAAT   TATAATCGTT    GG G ATATTACGT AAA AAATCGT      GGGGATTT    
AATTAACATG     A               AT      ATCAA              TTT         ATT          -TTC  A A         T   A       TTTATA        TTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520048

GCAAATTAAGAGTTAATTGCATTTAGTACCCTTATGTTATATCTAATTGCTAAAAAATCCTCCGTGTTACATATATTAGCAATGACCCCCCTATAATGCGTTTTGTTTAGCACACAACCCCTAAATAGTTAGTTTTTAGGGGATATTTTGCTAAAAAAATTGCATTATAAGAGGCTTTTGCTAATATTTATAATACGGATTTTTTTTTAGCAATTAAACTAAATATATAGGTGCTGAATGCAATAAACTCGTACAATTAA

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