SE3520049

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6267
  • Mimulus guttatus
  • SE3520049
  • Mutator
  • M8
  • scaffold_10:17099405-17099846
  • TATATTAGT
  • TATTAGTAGGGTAAATTACGGCCACCCCTTGAGGTAAGGTTAAATTACGAAAAAATCCCTCCGGTTTGGATAATTACAATCACCCCTCAATTATGAATCTTCTTACACGTTCACCCTTTGCGGTGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     --                   C    T                               CG            A           C                           -----     C           -  TGAAATCTTCTAAATTATGTGGAATATTCTCCAATTTGTACCCGTTTTACCCCATTCGAGCTCCACATTTTAAAACAAGATG
  TATTA  GTAGGGTAAATTACGGCCA CCCT GAGGTAAGGTTAAATTACGAAAAAATCCCTC  GTTTGGATAATT CAATCACCCCT AATTATGAATCTTCTTACACGTTCACC     CTTTG GGTGTCAATTT AG                                                                                  
  |||||  ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||  |||||||||||| ||||||||||| |||||||||||||||||||||||||||     ||||| ||||||||||| ||                                                                                  A
  ATGAT  TATCCCATTTAATGCTGGT GGGA CTCCATTCCAGTTTAATGCTTTTTTAGGGAG  CAAGCCTATTAA GTTGGTGGGGA TTGATACTTAGAAGAATGTGCAGGTGG     GGAAT CCACAGTCTTA AA                                                                                  
       TA                   T    -                               TA            C           A                           AGATG     A           C  GAGATCAAACATAAGCAAAACACGTTTTTACGTCAATATGTGGTGTTAGACTATAAATGTTCGGTTCTCTGTGTAGAATACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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