Plant MITE

SE3550051

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6269
Mimulus guttatus
SE3550051
PIF/harbinger
To7
scaffold_5:8672195-8672565
TAA
AGAGCAACTCCAATG

Secondary structure and sequence

TSD TIR

5'

3'

TA               CTAAAC      AT             A T   TTGATAATTA     ---    T  -   ---     T   CAATTTATCTACTCCAACCATGGTTATCTAAATCAATAATCAATTGGAAGTTTTTTAGTGGTTTTATTTGTAATTGCCATGTGTCATTTTGTGATTGGGTGTTTA
  AGAGCAACTCCAATG      ATCAAA  TGGATTATCAAAT C CAT          AGATA   ATAT TG AAT   ATTTA TTA                                                                                                         
  |||||||||||||||      ||||||  ||||||||||||| | |||          |||||   |||| || |||   ||||| |||                                                                                                          
  TCTCGTTGAGGTTAC      TAGTTT  ACCTAATAGTTTA G GTA          GGTGG   AACT AT AGG   TAATT TTA                                                                                                         
AA               -CCTCA      --             - -   -------TTT     AAA    -  A   TTT     -   AAAGGTGAGGTTACCCTCATAGTTTCACCCATTCATAAAACTATAAGATGGAGAAACTTACATTTTTATGTAGGGCCTTTAACTCAATAGTTTTTTTATTGATGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550051

TAAGAGCAACTCCAATGCTAAACATCAAAATTGGATTATCAAATACTCATTTGATAATTAAGATAATATTTGAATATTTATTTACAATTTATCTACTCCAACCATGGTTATCTAAATCAATAATCAATTGGAAGTTTTTTAGTGGTTTTATTTGTAATTGCCATGTGTCATTTTGTGATTGGGTGTTTATGTAGTTATTTTTTTGATAACTCAATTTCCGGGATGTATTTTTACATTCAAAGAGGTAGAATATCAAAATACTTACCCACTTTGATACTCCCATTGGAGTGGAAAATTTTAATTTTGGAATATCAAAAAGGTGGTTTATGGATTTGATAATCCATTTGATACTCCCATTGGAGTTGCTCTAA

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