SE3550052

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6270
  • Mimulus guttatus
  • SE3550052
  • PIF/harbinger
  • To2
  • scaffold_10:6486586-6486847
  • TTA
  • AGGCCCCGTTTGGTTGCCAAGATAAGCCATGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT     C          C       -----     T   -TAAC         -----          TGATGT    TATCCTCAATAA    CC    -    CCGCC      ATA   TCAT   TTATCTT   TTA
  AGGCC CGTTTGGTTG CAAGATA     AGCCA GAT     TAAATAGTT     GGACTTAATT      TTGG            CTTG  GGGT CGAC     AAAATT   TAA    GGC       GCC   
  ||||| |||||||||| |||||||     ||||| |||     |||||||||     ||||||||||      ||||            ||||  |||| ||||     ||||||   |||    |||       |||   T
  TCCGG GCAAACCAAC GTTCTAT     TCGGT CTA     ATTTATTAG     TCTGGGTTAA      AACC            GAAC  TCCA GTTG     TTTTGA   ATT    CCG       CGG   
AT     A          C       TCTAA     T   TTCTA         ATTAC          TAAAAT    ----------TC    TT    C    -TTTT      GTA   --TT   TTCTATT   TTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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