SE3520053

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6271
  • Mimulus guttatus
  • SE3520053
  • Mutator
  • M8
  • scaffold_14:8165297-8165761
  • TAAAATTAA
  • AGGGTATATTACAACCACCCCTGAGGTATGGTCAAATTACGAAACCCCCTCCTGTTTGGGTAATTACAACCACCCCTCAACTAT

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAATTA      T              -              A        --C      C                A CAC           -AAATA        AG          C   T  A       TGG    T  G     ATA      ATTA  ACT       C      ATCCCA    AACTCCACATTTTGAAGCAAGATGATCATAAGATGTGTTTTTT
        AGGGTA ATTACAACCACCCC TGAGGTATGGTCAA TTACGAAA   CCCCTC TGTTTGGGTAATTACA C   CCCTCAACTAT      TTTTTACA  TCCACCCTTG GGT TC AATTTAG   AATC TC AGATT   TGGAAT    TC   TTTGTAC CGTTTT      TTCG                                           
        |||||| |||||||||||||| |||||||||||||| ||||||||   |||||| |||||||||||||||| |   |||||||||||      ||||||||  |||||||||| ||| || |||||||   |||| || |||||   ||||||    ||   ||||||| ||||||      ||||                                            
        TCCCAT TAATGTTGGTGGGG ACTCCATACCAGTT AATGCTTT   GGGGAG ACAAACCTATTAATGT G   GGGAGTTGATA      AAGAATGT  AGGTGGGAAT CCA AG TTAAGTT   TTAG AG TCTAA   ACCTTA    AG   AAACATG GCAAAA      ACAT                                           
AATTAAAA      T              G              A        TTT      A                A ATA           CTAAAA        GG          A   C  C       GTA    T  A     AAC      CACG  ATC       A      -----C    TTTTATGTCAAAAACTACGTGGTGTTAGACTATATATGTTCGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End