SE3520054

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6272
  • Mimulus guttatus
  • SE3520054
  • Mutator
  • M3
  • scaffold_2:16901251-16901676
  • AAAAATTAA
  • GGGTAAATTACACCCACACCCCTAAGGTATGCTTAAATAATTTTAAGGTTCCTATGGTATCGATAATTATATCACCCCCTGAAACGTAGTTAGAAACTCTAACGGGATAATGCATTGGATACATTATTTCGATAGGGTTCTAATGGACTATTACTTTTAGCTAGTGGTGGAGATATAACATAGAGTTATGGGGAGTTATGGGGTGAAACCAATAGCTCTTTGTTGTCTCCACTAGTTCCTGAAACCAATAGTCCGTTAGAACTCTATCGTAATAACGTATCCAATACATGATCCCATTAGAGTTTATAACTACGTTTCAAGGGGGGTGAGTGTAATTATCGATACCACAGGGACCTTAAAATTATTTAAGCATACCTCAGAGGTGTGG

Secondary structure and sequence

TSD    TIR
5'



3'
AAAAATTAA             -------       C  A                             A                 -         --            G         C     A   C         A     T                       AC      CT G           TA   T        G  GAG    G
         GGGTAAATTACAC       CCACACC CT AGGTATGCTTAAATAATTTTAAGGTTCCT TGGTATCGATAATTATA TCACCCCCT  GAAACGTAGTTA AAACTCTAA GGGAT ATG ATTGGATAC TTATT CGATAGGGTTCTAATGGACTATT  TTTTAG  A TGGTGGAGATA  ACA AGAGTTAT GG   TTAT 
         |||||||||||||       ||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||  |||||||||||| ||||||||| ||||| ||| ||||||||| ||||| |||||||||||||||||||||||  ||||||  | |||||||||||  ||| |||||||| ||   |||| G
         CCCATTTAATGTG       GGTGTGG GA TCCATACGAATTTATTAAAATTCCAGGGA ACCATAGCTATTAATGT AGTGGGGGG  CTTTGCATCAAT TTTGAGATT CCCTA TAC TAACCTATG AATAA GCTATCTCAAGATTGCCTGATAA  AAAGTC  T ATCACCTCTGT  TGT TCTCGATA CC   AGTG 
AATTAAAAA             AGTGTGC       A  C                             C                 G         AA            A         A     G   A         C     T                       CC      CT G           --   T        A  -AA    G

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End