SE3520055

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6273
  • Mimulus guttatus
  • SE3520055
  • Mutator
  • M3
  • scaffold_4:4016007-4016449
  • TATAAATAA
  • AGGGTAAATTACACCCACACCCCTGAGGTATGCTTAAATAACTTTAAGGTACTTGTGGTATCGATAATTACACTCATCCCCTTGAAACGTAGTTATAAACTCTAATGGGATAATGCATTGGATACGTTATTACGATAGAGTTCTAACGGACTATTGGTTTCAGGAAGTGGTGGAGACAACAAAGAGTTAT

Secondary structure and sequence

TSD    TIR
5'



3'
TATAAATA                                         C        AC                    C   T                  T                                  TA      A       C             C  GA           C    A        GAGTGATTTAAGAAATATTG      CC   TCA
        AGGGTAAATTACACCCACACCCCTGAGGTATGCTTAAATAA TTTAAGGT  TTGTGGTATCGATAATTACA TCA CCCCTTGAAACGTAGTTA AAACTCTAATGGGATAATGCATTGGATACGTTAT  CGATAG GTTCTAA GGACTATTGGTTT AG  AGTGGTGGAGA AACA AGAGTTAT                    GGGGAG  ATG   
        ||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||| ||||||| ||||||||||||| ||  ||||||||||| |||| ||||||||                    ||||||  |||    
        TCCCATTTAATGTGGGTGTGGGGACTCCATACGAATTTATT AAATTCCA  GATACCATAGCTATTAATGT AGT GGGGAACTTTGTATCAAT TTTGAGATTGCCCTATTACGTAACCTATGTAATA  GCTATC CAAGATT CCTGATAATTAAA TC  TCACCACCTCT TTGT TCTCAATA                    CCCCTC  TAC   
AATAAATA                                         A        GA                    A   -                  C                                  AG      C       A             A  GA           A    A        --------------------      AA   TCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End