SE3520057

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6275
  • Mimulus guttatus
  • SE3520057
  • Mutator
  • M14
  • scaffold_14:14241773-14242018
  • ATATATTAA
  • ATGGGTAAATTGCAACCACCTCCCCAAGGTAAATTGTAATTACAAAAAACCCATTCTTTTTTAGAAATTACATCCAGCCCCTGCAGTTTGTAAATTCCTTACATCTACGCCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATATATTA                 A  T   CA      AT G  A   -C         A   --TT     GA           GC              A   C       CT       GC
        ATGGGTAAATTGCAACC CC CCC  AGGTAA  T TA TTA  AAAAAACCC TTC    TTTTA  AATTACATCCA  CCCTGCAGTTTGTA ATT CTTACAT  ACGCCCT  
        ||||||||||||||||| || |||  ||||||  | || |||  ||||||||| |||    |||||  |||||||||||  |||||||||||||| ||| |||||||  |||||||  A
        TACCCATTTAATGTTGG GG GGG  TCCATT  A AT AAT  TTTTTTGGG GAG    AAAGT  TTAATGTAGGT  GGGATGTTAAACAT TAA GAATGTA  TGTGGGA  
TAATTATA                 C  -   AC      CC G  A   AC         -   TAAT     -A           -A              C   A       AT       AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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