SE3520058

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6276
  • Mimulus guttatus
  • SE3520058
  • Mutator
  • M3
  • scaffold_14:5431114-5431556
  • TAAATTTTA
  • TTTAGGGTAAATTACACCTACACCCCTGACGTATGCTAAAATAACTTTAAGGTCCCTGTGGTATTAGTAATTATAGCCACACCCCTGAAGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAT                    CAC      C  A           C        C C         A          CC  A           ATTA       C -   TT   T     -- GGGATCGATATGCACTGTATTTCTTTTTCCGCGGGGCCGTTAATGCTACCATAGACGAAAATTTATAAATCTTATATAAAATAATAAGGATTTAAGAA
     TTTAGGGTAAATTACACCTA   CCCTGA GT TGCTAAAATAA TTTAAGGT C TGTGGTATT GTAATTATAG  AC CCCCTGAAGCA    CCGGAGA A AGA  TCA GTCAT  G                                                                                                  
     ||||||||||||||||||||   |||||| || ||||||||||| |||||||| | ||||||||| ||||||||||  || |||||||||||    ||||||| | |||  ||| |||||  |                                                                                                   
     AAATCCCATTTAATGTGGAT   GGGACT CA ACGATTTTATT AAATTCCA G ACACCATAG CATTAATGTT  TG GGGGATTTTGT    CAATCTT G GAT  TGC TTATT  G                                                                                                  
ATCTT                    ATA      -  A           A        A T         C          AC  -           --CA       T A   --   A     AT TAACCTATTCAATAAAGCAATCCCAAGATTGCCTGATAATAAAAAACCTTCACACCCTCTGTTGTATCTTAATCCCCCACTGTACAGAGAGGGTTGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3