SE3520059

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6277
  • Mimulus guttatus
  • SE3520059
  • Mutator
  • M2
  • scaffold_8:3279403-3279874
  • TATTTGTAA
  • AGGGTAAATTACAACCACCCTTGAGGTATGCTCAATTTACGAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TATTTGTA                 --             C    T         AAAAC    A       -AT       T       -          TT           C     C   A    G       CAACAT    A  T     TC        TGC  TAG     A         - G  --AA   -A   T  C   T   CCACACA   -      ATATAAGCC
        AGGGTAAATTACAACCA  CCCTTGAGGTATG TCAA TTACGAAAA     CCTC TGTTTGG   AATTACA CTACCCC TCAACTATGA  TTTTCTTACAC TCCAC CTT TGGT TCAAATT      AATC TC AGATT  GTGGAATG   TC   TTTGT CTCGTTTTG C TA    AAT  CAC TT TGA GCA       ATC TGATAT         
        |||||||||||||||||  ||||||||||||| |||| |||||||||     |||| |||||||   ||||||| ||||||| ||||||||||  ||||||||||| ||||| ||| |||| |||||||      |||| || |||||  ||||||||   ||   ||||| ||||||||| | ||    |||  ||| || ||| |||       ||| ||||||          
        TCCCATTTAATGTTGGT  GGGGACTCTATAC AGTT AATGCTTTT     GGAG ACAAACC   TTAATGT GGTGGGG AGTTGATATT  AGAAGAATGTG AGGTG GAA ACCA AGTTTAA      TTAG AG TCTAA  TACCTTAT   AG   AAACA GGGCAAAAT G GT    TTG  GTG AA ACT CGT       TAG ATTATA         
AATGTTTA                 TG             C    T         --GGA    G       CAT       T       G          -T           C     T   C    A       ATCACC    A  C     TA        TAT  TGA     C         A G  AAGC   AG   T  A   T   --TCTAC   T      CACAAAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End