SE3520060

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6278
  • Mimulus guttatus
  • SE3520060
  • Mutator
  • M2
  • scaffold_5:4545725-4546163
  • TAAAAATAA
  • AGGGTAATTACAAACACCCCTGAGGTATGGTCAAATTACAAAAACACCCCTCTTGTTTGGATAATTACAACCACCCCCTCAACT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAATA       -              --               T        A                       A C            ----------CCT     TTAGTGGAATCTTCGAGATTATATGGAATATTGTCACTTTTGTACCCGTTTTATCCCATTCAAACTCTACATTATGAAGCAAGATGATCATAATATGTGATTTTTAACTTGTA
        AGGGTAA TTACAAACACCCCT  GAGGTATGGTCAAAT ACAAAAAC CCCCTCTTGTTTGGATAATTACA C ACCCCCTCAACT             CAAAT                                                                                                                 
        ||||||| ||||||||||||||  ||||||||||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||             |||||                                                                                                                  
        TCCCATT AATGTTTGTGGGGG  CTCCATACCAGTTTA TGTTTTTG GGGGAGAACAAACCTATTAATGT G TGGGGGAGTTGA             TGTGG                                                                                                                 
AATAAAAA       T              GA               T        G                       A A            TACTAAAAAAGAA     AGGTGGGAATACCACGGTTTAAGTTGTATTAGTAGATATAAGGCACTTTACACGAGATCAAACATAAGCAAAACACATTTTTATGTCAAAGGCTACGTGGTGTTTGACTATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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