SE3520061

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6279
  • Mimulus guttatus
  • SE3520061
  • Mutator
  • M3
  • scaffold_7:13441386-13441829
  • TTATAAATA
  • TTATAAATAGGGTAAATTACACGCACACCTCTGAGGTATGCTTAAATAACTTTAAGGTCCCTGTGGTATCGATAATTACACTCACCCCCTTGAAACGTAGTTATAAACTCTAATGGGATAATACATTGGATACGTTATTACGATAGAGTTCTAACGGACTATTGATTTCAGGAAGTGGTGGAGACAACAAATAGTTATGGGTGATTTA

Secondary structure and sequence

TSD    TIR
5'



3'
        AAT              G          A               C                                 A                   T                  A               TA      A       C         A   C  GA           C    AAT G       T  T   AGAAATAT     -  GCC
   TTATA   AGGGTAAATTACAC CACACCTCTG GGTATGCTTAAATAA TTTAAGGTCCCTGTGGTATCGATAATTACACTC CCCCCTTGAAACGTAGTTA AAACTCTAATGGGATAAT CATTGGATACGTTAT  CGATAG GTTCTAA GGACTATTG TTT AG  AGTGGTGGAGA AACA   A TTATGGG GA TTA        TGGGG GA   
   |||||   |||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||  |||||| ||||||| ||||||||| ||| ||  ||||||||||| ||||   | ||||||| || |||        ||||| ||    
   AATAT   TCCCATTTAATGTG GTGTGGGGAC CCATACGAATTTATT AAATTCCAGGGATACCATAGCTATTAATGTGGG GGGGGGATTTTGCATCAAT TTTGAGATTGCCCTATTA GTAACCTATGTAATA  GCTATC CAAGATT CCTGATAAT AAA TC  TCACCACCTCT TTGT   T AATACCC CT AAT        ACCCC CT   
ATA     ---              G          A               A                                 G                   C                  C               AG      C       A         G   A  GA           A    ATC G       -  C   --------     A  GTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End