SE3520062

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6280
  • Mimulus guttatus
  • SE3520062
  • Mutator
  • M2
  • scaffold_1:5978382-5978848
  • TATAAATAA
  • AGGGTAAATTACAACCACCCCTGAGGTATGGTCAAATTAAAGAAAAAAACCCTCATGTTTGGGTAATTACAACCACCCCTCAACTAT

Secondary structure and sequence

TSD    TIR
5'



3'
TATAAATA                   -   -             A   AA      AA     A                A C  C  T       -AAATC         G CC       C   TTA     TA   -  ATT       AT  ATAGAATATTATCACTTTTCTACCCGCTTTATCCCATTCGAACTCCACATTTTGAAGCAAGATGATCATAATATGTGTTTTTT
        AGGGTAAATTACAACCACC CCT GAGGTATGGTCAA TTA  GAAAAA  CCCTC TGTTTGGGTAATTACA C AC CC CAACTAT      TTCTTACAC T  ACCCTTG GGT   AAATT  GTG GA   TTCGAGT  AT                                                                                   
        ||||||||||||||||||| ||| ||||||||||||| |||  ||||||  ||||| |||||||||||||||| | || || |||||||      ||||||||| |  ||||||| |||   |||||  ||| ||   |||||||  ||                                                                                    
        TCCCATTTAATGTTGGTGG GGA CTCCATACTAGTT AAT  CTTTTT  GGGAG ACAAACCTATTAATGT G TG GG GTTGATA      AAGAATGTG A  TGGGAAT CCA   TTTAA  GTT TA   TTAGTAG  GT                                                                                   
AATAAATA                   A   A             A   -G      TG     A                A A  A  -       CTAAAA         G CT       A   CAG     --   G  ---       --  CTAAAGCACCTAACACGAGATCAAACAGGAGCAAAACACATTTTATGTCAAAGACTATTTGGTGTTAGACTATATATGTTCGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End