Plant MITE

SE3550064

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6282
Mimulus guttatus
SE3550064
PIF/harbinger
To8
scaffold_2:15588263-15588607
TTA
AGAGGGTGTTTGGCTAAGCTTATAAGATGTT

Secondary structure and sequence

TSD TIR

5'

3'

TT                      ---    AT   AAAAG      ---------             -     T       CTTCCAA   -  TTGGTAAATTTTTAGAAAAAGATCTTAATTTTTTTAAAATAAGCTGTTGGAGAGCAAATAAGATCTTTTTAAATAAGTACCTCTA
  AGAGGGTGTTTGGCTAAGCTTA   TAAG  GTT     GAGCTT         ATAAGATGTTTTA GAGCT ATAAGCT       AGT GT                                                                                     
  ||||||||||||||||||||||   ||||  |||     ||||||         ||||||||||||| ||||| |||||||       ||| ||                                                                                     C
  TCTCCCACAAACCGATTCGAAT   ATTC  CGA     TTCGAG         TATTCTACAAAAT CTCGA TATTCGA       TAG AT                                                                                     
AT                      AAA    GT   --CTA      AATGCAGAC             T     C       --CAATG   A  AAAAATCCTAATTAAAAATCTCACAAACCTATTACCCGAATAAAGGATAAAAATGAGTAATTTTCTAGAATTTATTTTTCCACCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550064

TTAGAGGGTGTTTGGCTAAGCTTATAAGATGTTAAAAGGAGCTTATAAGATGTTTTAGAGCTTATAAGCTCTTCCAAAGTGTTTGGTAAATTTTTAGAAAAAGATCTTAATTTTTTTAAAATAAGCTGTTGGAGAGCAAATAAGATCTTTTTAAATAAGTACCTCTACCCCACCTTTTTATTTAAGATCTTTTAATGAGTAAAAATAGGAAATAAGCCCATTATCCAAACACTCTAAAAATTAATCCTAAAAATAAGATGTAACAGCTTATCAGCTCTTAAAACATCTTATCAGACGTAAGAGCTTATCAGCTGCTTAAAATAAGCTTAGCCAAACACCCTCTTA

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