Plant MITE

SE3530065

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6283
Mimulus guttatus
SE3530065
hAT
Hat5
scaffold_13:1484498-1485073
ATGTTTAC
GTTTACCTAGACACGGCCATGGGCCGGTTTTGGGCC

Secondary structure and sequence

TSD TIR

5'

3'

AT  TT  -C                             C   ACCGGCCCGTTGACGACCCGGCCCAACCCGTTGACCGGTGAACCGGCCCGGGACCCGTGAACCGGCCCGTCGTCCCCGGGACGGGCCCGGTTCTATGAAATGGTGAACCGTGAACCGCTGGGCCGGCCCGGCGGTTCACCCGGATTTAAAAAAAAAAATCAAAAAAATTAAAAAAAAAAGCAAATAACGGCTAGTGAACCGGCCCGAACTGGCCGTTATTTGCTTTTTTTTGAATTCCCCCCCCCC
  GT  AC  TAGACACGGCCATGGGCCGGTTTTGGGCC GGA                                                                                                                                                                                                                                                      
  ||  ||  ||||||||||||||||||||||||||||| |||                                                                                                                                                                                                                                                      C
  CA  TG  ATCTGTGCCGGTGCCCGGCCAAGGCCCGG CCA                                                                                                                                                                                                                                                      
 C  TT  TA                             -   AGTATGGCCAAGTACTAAGTCAAAAAGGCCTTGGCCTTGGCCGGGCATTATACGTGCCAAGCTACCCGGCCCAGCTGGGCGGCCAAGCCCGGCCAAGGCCCGGATAGGCCCGGCCAAGGCCCAGCCGGGCCTTTTAAACTTTAAAAATAAAATAAAAAAGAATGAAAAAAAAAAACTTTATAAACTACTTATTCATTTAATATCCTTTTTAACCCTACACTTCCATAAATATCCTTTTTTCCCCCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3530065

ATGTTTACCTAGACACGGCCATGGGCCGGTTTTGGGCCCGGAACCGGCCCGTTGACGACCCGGCCCAACCCGTTGACCGGTGAACCGGCCCGGGACCCGTGAACCGGCCCGTCGTCCCCGGGACGGGCCCGGTTCTATGAAATGGTGAACCGTGAACCGCTGGGCCGGCCCGGCGGTTCACCCGGATTTAAAAAAAAAAATCAAAAAAATTAAAAAAAAAAGCAAATAACGGCTAGTGAACCGGCCCGAACTGGCCGTTATTTGCTTTTTTTTGAATTCCCCCCCCCCCCCCCCCTTTTTTCCTATAAATACCTTCACATCCCAATTTTTCCTATAATTTACTTATTCATCAAATATTTCAAAAAAAAAAAGTAAGAAAAAATAAAATAAAAATTTCAAATTTTCCGGGCCGACCCGGAACCGGCCCGGATAGGCCCGGAACCGGCCCGAACCGGCGGGTCGACCCGGCCCATCGAACCGTGCATATTACGGGCCGGTTCCGGTTCCGGAAAAACTGAATCATGAACCGGTATGAACCGGCCCGGAACCGGCCCGTGGCCGTGTCTAATGTTTACC

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