SE3550066

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6284
  • Mimulus guttatus
  • SE3550066
  • PIF/harbinger
  • To9
  • scaffold_6:1887339-1887721
  • TTA
  • AGGGCATCTCCAACC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               T  -       ------------------A   --   -  AT  -  TATCTATTTTAGCTAACAAATAATGTTTTAACAACTCATTTTCTACCATTCACTCCAATCATATAATGTATAATTTACCATTCTATTATATTTTATTATTTGTTGAATATTTATTATTTTGACTTTCTACTTTTTGCCA
  AGGGCATCTCCAACC TG AGTGGTA                   AAA  ATG GG  GC TA                                                                                                                                           
  ||||||||||||||| || |||||||                   |||  ||| ||  || ||                                                                                                                                            
  TCTCGTAGAGGTTGG AC ACTTATA                   ATA  GAA AT  GG GA                                                                                                                                           
AT               T  T       CCTCTCAATTTTCAATTTT   TC   A  --  A  ACATTTATCTTTTTTTAGTAGAGGTTACCCATTCGATTTTAAATCGAGTGTACGATTTCCTTCTCTCTCCTTACGATATGTATCGAAAGTTGATAAGTGTTTACCATATTCTTTATTATAATTTTATTATCCAAAAACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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