Plant MITE

SE3510067

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6285
Mimulus guttatus
SE3510067
Tc1/Mariner
St2
scaffold_8:1207783-1208060
TA
TACTCCCTCCTTCCCTCAATAGTTGTCACTTTTGTTAGTT

Secondary structure and sequence

TSD TIR

5'

3'

                C    G          T       GCACA      AA   ACTCAATAAATA   ATAGATAGTAGCAAAAAGTATAGTAAATCACTAAAATGCCCATGCCATTAATTGATTTTAAAATAATTATATT
TACTCCCTCCTTCCCT AATA TTGTCACTTT GTTAGTT     CATATT  GAA            TGC                                                                         
|||||||||||||||| |||| |||||||||| |||||||     ||||||  |||            |||                                                                          
ATGAGGGAGGAAGGGA TTAT AACAGTGAAA CGGTTAA     GTATAA  TTT            AAC                                                                         
                A    A          C       --AAA      AG   --------AATA   AGTAAAGTGATAAGGTTACTTATTAATTAACGTTAAAAAAGTTAAAACGGGAAAGAGTGAGTATTAATTAACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3510067

TACTCCCTCCTTCCCTCAATAGTTGTCACTTTTGTTAGTTGCACACATATTAAGAAACTCAATAAATATGCATAGATAGTAGCAAAAAGTATAGTAAATCACTAAAATGCCCATGCCATTAATTGATTTTAAAATAATTATATTTCAATTAATTATGAGTGAGAAAGGGCAAAATTGAAAAAATTGCAATTAATTATTCATTGGAATAGTGAAATGACAAATAATTTGAAATATGAAAAATTGGCCAAAGTGACAAATATTAAGGGAAGGAGGGAGTA

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