SE3520068

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6286
  • Mimulus guttatus
  • SE3520068
  • Mutator
  • M4
  • scaffold_7:4563357-4563857
  • TTATAATTA
  • TTATAATTAGGGTAAAATCAACTTTCCCCTCTTGTACTTTGGCTCGGTATCACTTTACCCTTTTCTACTCCCGATTGCATCGATTTGCCCCCCTATACTTGAAAAAATGTCTCAATGTGGCCCCGTTGTTAGTTGTCAAACATTTGACCTTAACACCGTTTGATCTAATCTCTTAAATTACAAAAACGTCACCTCTCCTAGTTTAAATAATTATTAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
        ATT        A  A                     G                C           C               G       -            A                -       A   G   A  A      C       C         AA   CTT            --CG        C  -                      TAATAAAAAAAAAAA   -A   AACGAGA
   TTATA   AGGGTAAA TC ACTTTCCCCTCTTGTACTTTG CTCGGTATCACTTTAC CTTTTCTACTC CGATTGCATCGATTT CCCCCCT ATACTTGAAAAA TGTCTCAATGTGGCCC CGTTGTT GTT TCA AC TTTGAC TTAACAC GTTTGATCT  TCT   AAATTACAAAAA    TCACCTCT CT AGTTTAAATAATTATTAAAAAA               TCA  GAC       
   |||||   |||||||| || ||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||| |||||||||||| |||||||||||||||| ||||||| ||| ||| || |||||| ||||||| |||||||||  |||   ||||||||||||    |||||||| || ||||||||||||||||||||||               |||  |||        
   AATAT   TCCCATTT AG TGAAAGGGGGGAACATGAAAC GAGCTATAGTGAAATG GGGAAGATGAG GTTAACGTAGCTAAA GGGGGGA TATGAACTTTTT ACAGAGTTACACCGGG GCGGTAA CAA AGT TG AAACTG AATTGTG CAAACTAGA  AGA   TTTAATGTTTTT    GGTGGGGG GA TTAAATTTATTAATAATTTTTT               AGT  CTG       
ATT     ---        A  G                     G                A           A               -       A            A                A       G   -   C  G      T       T         GC   -CT            TTTT        A  G                      --TAACACCGACCAC   AC   ATACAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End