SE3520069

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6287
  • Mimulus guttatus
  • SE3520069
  • Mutator
  • M3
  • scaffold_1:7525346-7525788
  • TTTATTTAT
  • GGGTAAATTACACCCACACCCCTGAGGTATACTTAAATAATTTTAAGGTCCCTGTGGTATCGATAATTACAATCACCCCCTTGAGACGTAGTTATAAACTCCAATCGTATAATGCATTGGATGCGTTATTACGATGGAGTTCTAACGGACTATTGGTTTCAGGAAGTGGTGAAGACAACAAAGAGTTATGGGTGATTTA

Secondary structure and sequence

TSD    TIR
5'



3'
TTTATTTAT                              A           T                            A         T    C       T      C   C T                     TA      A       C         G   C  GA   G   A   C    A   G       T  T   AAAAATATTC    AGCCA
         GGGTAAATTACACCCACACCCCTGAGGTAT CTTAAATAATT TAAGGTCCCTGTGGTATCGATAATTACA TCACCCCCT GAGA GTAGTTA AAACTC AAT G ATAATGCATTGGATGCGTTAT  CGATGG GTTCTAA GGACTATTG TTT AG  AGT GTG AGA AACA AGA TTATGGG GA TTA          GGGG     
         |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| ||||||| |||||| ||| | |||||||||||||||||||||  |||||| ||||||| ||||||||| ||| ||  ||| ||| ||| |||| ||| ||||||| || |||          ||||      
         CCCATTTAATGTGGGTGTGGGGACTCCATA GAATTTATTGA ATTCCAGGGACACCATAGCTATTAATGT AGTGGGGGA CTTT CATCAAT TTTGAG TTA C TATTACGTAACCTATGTAATA  GCTATC CAAGATT CCTGATAAT AAA TC  TCA CAC TCT TTGT TCT AATACCC CT AAT          CCCC     
TATTTATTT                              C           C                            G         -    C       T      A   C C                     AG      C       A         G   A  GA   A   C   A    A   A       -  C   ---------A    ACTGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End