SE3520071

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6289
  • Mimulus guttatus
  • SE3520071
  • Mutator
  • M15
  • scaffold_7:5474226-5474596
  • TTGATTTAA
  • TGATTTAAGGGTAAATAGCACTTAACTCCCCTATGGTTACAAGCTTTTGCAGATGACTACCTTGTGCTTGTAATATCATCACATAACCCCCTTATGGTTGATGGGGTAGCTTCTGTTAGTTTTTCCATCAAACTTAACCGC

Secondary structure and sequence

TSD    TIR
5'



3'
T   T                C           A                         A                  AT         C    A     G                        -  A              TTCTG      GTGA   TATTTTT      --     -C  CCT
 TGA TTAAGGGTAAATAGCA TTAACTCCCCT TGGTTACAAGCTTTTGCAGATGACT CCTTGTGCTTGTAATATC  CACATAACC CCTT TGGTT ATGGGGTAGCTTCTGTTAGTTTTT CC TCAAACTTAACCGC     TCAAAC    AAG       TTTGCA  GATGA  GC   
 ||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||  ||||||||| |||| ||||| |||||||||||||||||||||||| || ||||||||||||||     ||||||    |||       ||||||  |||||  ||    
 ATT AGTTCCCATTTATCGT AATTGGGGGGA GCCAATGTTTGAAAACGTCTACTGA GGAACACGAACATTATAG  GTGTATTGG GGAA ACCAA TACCCCATCGAAGGCAATCAAAAA GG AGTTTGAATTGGCG     AGTTTG    TTC       AGACGT  TTACT  CG   
A   T                A           C                         G                  CC         A    C     A                        A  C              CACAA      -AAG   CCCCAGT      TT     TT  TGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End