SE3530073

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6291
  • Mimulus guttatus
  • SE3530073
  • hAT
  • Hat29
  • scaffold_9:3307253-3307712
  • GGAATAGA
  • CTATGTAGCACGGACACGAAAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
GGAATAGA              C  GAA   GACG   C   GAAA  GGAAAA    T   ----    AA GGCA    --  AAAAATGGGGATACAGGAGCTTGGAGGAAACGTGTAAATATTAAAAGTATAGGGGTATATTTATAAATATGCTATATAAACACATACAAGTTTTTATTTATATATAAATTCTTTTAATATATTTTCACACAAACATTTTCAAAATAAATTTT
        CTATGTAGCACGGA AC   AAC    ATA AGG    CG      CGGA ACG    GAGT  C    TGTC  CC                                                                                                                                                        
        |||||||||||||| ||   |||    ||| |||    ||      |||| |||    ||||  |    ||||  ||                                                                                                                                                         
        GATACATCGTGCCT TG   TTG    TAT TCC    GC      GCCT TGC    CACA  G    CTGT  AC                                                                                                                                                        
AGATAAGG              T  AAG   -AAG   -   AAAG  -ACAAA    C   AAAG    -- ---A    GA  TCCTGTGGACAGCCTGTGGAATACCCGATAAAACGTTAAATATTTTTCAATCTTTGTACAAACTAAAACTTATTATTTCAAAGTTTATAAAAACAATGAAGAGATTAATAAATGTACCAAATTACTAGTTAAAGTCTGTCTAACAACTATCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3