Plant MITE

SE3520074

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6292
Mimulus guttatus
SE3520074
Mutator
M18
scaffold_6:17624115-17624466
TAAAAATAA
AGGGCAAATTGCACATCACCCCCTAGAAATTTCTAATTTTCGCGCTTTACCTCCTCAAATTTTTAAAAAGTGAATGCCCCCCTTTAAAATGTTATTCTTGTTGCACATTGCCCTAATAGG

Secondary structure and sequence

TSD TIR

5'

3'

TAAAAATA        T     A          G      -   A                   C   TT     A  G  A   C                   CTT       A        A    A    TCCGATGGATTATTCATCGGCATTTGAGTATTTTTGTTGCACAT
        AGGGCAAA TGCAC TCACCCCCTA AAATTT CTA TTTTCGCGCTTTACCTCCT AAA  TTTAA AA TG ATG CCCCCTTTAAAATGTTATT   GTTGCAC TTGCCCTA TAGG AAAT                                            
        |||||||| ||||| |||||||||| |||||| ||| ||||||||||||||||||| |||  ||||| || || ||| |||||||||||||||||||   ||||||| |||||||| |||| ||||                                            T
        TCCTGTTT ACGTG AGTGGGGGAT TTTAAA GGT AAAAGCGTGAAATGGGGGA TTT  AAGTT TT AC TAT GGGGGAAGTTTTATAATAA   CAACGTG AACGGGGT ATTC GGTA                                            
AATAAAAA        T     A          G      A   -                   -   TT     C  A  C   T                   AAC       A        -    -    AAAAAATACCCGTAACACGTTGTTTTTATTGTAAAACTTCTCCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520074

TAAAAATAAGGGCAAATTGCACATCACCCCCTAGAAATTTCTAATTTTCGCGCTTTACCTCCTCAAATTTTTAAAAAGTGAATGCCCCCCTTTAAAATGTTATTCTTGTTGCACATTGCCCTAATAGGAAAATTCCGATGGATTATTCATCGGCATTTGAGTATTTTTGTTGCACATTGCCTCTTCAAAATGTTATTTTTGTTGCACAATGCCCATAAAAAAATGGCTTATGGGGCAAAGTGCAACCAAAATAATATTTTGAAGGGGGTTATCCAATTCTTGAATTTTTAGGGGGTAAAGTGCGAAAATGGAAAATTTGTAGGGGGTGAAGTGCATTTTGTCCTAAAAATAA

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