Plant MITE

SE3520075

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6293
Mimulus guttatus
SE3520075
Mutator
M2
scaffold_12:21432237-21432502
TTGTTTTTA
AGGGCAAATTACGGCCACCCCTTAAGGTAAGGTCAAATTACGAAAAAACCCTTATTGTTTGGGTATTTACAATCATCCCCTCAACTATG

Secondary structure and sequence

TSD TIR

5'

3'

TTGTTTTT                 -      A                   AA        -A           T       C     C         TATTA       CGTCC      --A    --    A
        AGGGCAAATTACGGCCA CCCCTT AGGTAAGGTCAAATTACGA  AAACCCTT  TTGTTTGGGTA TTACAAT ATCCC TCAACTATG     TCTTACA     ACCCTT   TAGT  GTAA 
        ||||||||||||||||| |||||| |||||||||||||||||||  ||||||||  ||||||||||| ||||||| ||||| |||||||||     |||||||     ||||||   ||||  |||| A
        TCTCGTTTAATGCCGGT GGGGGA TCCATTCCAGTTTAATGCT  TTTGGGGA  GACAAACCCAT AATGTTG TGGGG AGTTGATAC     AGAATGT     TGGGAA   ATTA  CATT 
ATTTTTGT                 T      C                   -C        AG           T       A     A         TAAAA       TTTTT      GAA    AC    T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520075

TTGTTTTTAGGGCAAATTACGGCCACCCCTTAAGGTAAGGTCAAATTACGAAAAAACCCTTATTGTTTGGGTATTTACAATCATCCCCTCAACTATGTATTATCTTACACGTCCACCCTTATAGTGTAAAATTTACCAATTAAAGAAGGGTTTTTTTGTAAGAAAAATCATAGTTGAAGGGGTAGTTGTAATTACCCAAACAGGAAGGGGTTTCTCGTAATTTGACCTTACCTCAGGGGGTTGGCCGTAATTTGCTCTTGTTTTTA

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