Plant MITE

SE3520076

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6294
Mimulus guttatus
SE3520076
Mutator
M19
scaffold_4:4806468-4807182
AAAGATTAA
GGCTTAATTCCACTTTGCACCCTTGAAATATACCATTTTGGCACTTTGCACCCTCGAAA

Secondary structure and sequence

TSD TIR

5'

3'

AAAGATTAA                                                           AATAAT   A              CA                T                 T    AA    TAA  T     TTTTCATTGGTGTTTTTTTTTTTTCGCGGTGCAAATTAAAAAAATAAATTGTTATTTTGTTGAACCTCCAACCTAATTTCGATATCACAAAGTAGAAAAAAATAAAAATTACACCAAATTATTTAAAAAAAATATATTTTCTTACAAAAAATAAAATAAGCTTGTATAACTAAATTATTCGATTGATAAATCTTTTATTGTAACAGGCTAACAATATTATTAGGTA
         GGCTTAATTCCACTTTGCACCCTTGAAATATACCATTTTGGCACTTTGCACCCTCGAAA      AAT GCACTTTGCACCCT  AAATACAATAAATCAT CACAATGCACCCCGAAT GAAT  TAAA   TA TTCAT                                                                                                                                                                                                                                  
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||| ||||||||||||||  |||||||||||||||| ||||||||||||||||| ||||  ||||   || |||||                                                                                                                                                                                                                                   
         CCGAATTAAGGTGAAACGTGGGAACTTTATATGGTAAAACCGTGAAACGTGGGAGCTTT      TTA CGTGAAATGTGGGA  TTTATGTTATTTAGTA GTGTTACGTGGGGTTTA CTTA  ATTT   GA TTTTT                                                                                                                                                                                                                                  
AATTAGAAA                                                           GTTTAT   C              AC                C                 -    AA    --C  -     TACATTAAATTATAAAAATCACTATAAAAAAATCCTACGGTTTACAGTTTATAAAAAATTAAGTAGTTAGTAAAACTTTGGTATTTCACTTTTTTATTTTTATGCAAAGTAGTTGTATAAATTTTTAATATAAAAAAATAGTTTTATTTTATGAAATGTTTTCTTTTTAGTAAGTCGATAAGGCAATAGTCCAATGTACTTTTAGTATAAAATAAGGTTTATAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520076

AAAGATTAAGGCTTAATTCCACTTTGCACCCTTGAAATATACCATTTTGGCACTTTGCACCCTCGAAAAATAATAATAGCACTTTGCACCCTCAAAATACAATAAATCATTCACAATGCACCCCGAATTGAATAATAAATAATATTTCATTTTTCATTGGTGTTTTTTTTTTTTCGCGGTGCAAATTAAAAAAATAAATTGTTATTTTGTTGAACCTCCAACCTAATTTCGATATCACAAAGTAGAAAAAAATAAAAATTACACCAAATTATTTAAAAAAAATATATTTTCTTACAAAAAATAAAATAAGCTTGTATAACTAAATTATTCGATTGATAAATCTTTTATTGTAACAGGCTAACAATATTATTAGGTAATAATATTTGGAATAAAATATGATTTTCATGTAACCTGATAACGGAATAGCTGAATGATTTTTCTTTTGTAAAGTATTTTATTTTGATAAAAAAATATAATTTTTAAATATGTTGATGAAACGTATTTTTATTTTTTCACTTTATGGTTTCAAAATGATTGATGAATTAAAAAATATTTGACATTTGGCATCCTAAAAAAATATCACTAAAAATATTAAATTACATTTTTTAGCTTTAAAATTCATTTGGGGTGCATTGTGCATGATTTATTGTATTTCAAGGGTGTAAAGTGCCATTTATTTGTTTCGAGGGTGCAAAGTGCCAAAATGGTATATTTCAAGGGTGCAAAGTGGAATTAAGCCAAAGATTAA

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