Plant MITE

SE3520078

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6296
Mimulus guttatus
SE3520078
Mutator
M2
scaffold_10:5265077-5265350
TAATTTTTT
GGGCAAATTTCGGTCACCCCC

Secondary structure and sequence

TSD TIR

5'

3'

TAATTTTTT         T           ACCCCCC       A  C     T         -CC            A    G                                 AAAAA    CTCCTTCAGTAGGTA
         GGGCAAATT CGGTCACCCCC       TGAGGTA GC CAAAT ATGAGAAAG   CCTCATGTTTGG TAAT ACAACCACCCCTTCAACTATGTATTGTCTTACG     ACCT               
         ||||||||| |||||||||||       ||||||| || ||||| |||||||||   |||||||||||| |||| |||||||||||||||||||||||||||||||||     ||||               A
         CCCGTTTAA GCCGGTGGGGG       ACTCCAT CG GTTTA TGTTTTTTT   GGAGTACAAACC ATTA TGTTGGTGGGGGAGTTGGTACATAACAGAATGT     GTGG               
TTCTTTAAT         T           -------       A  A     T         TTT            C    A                                 -GCAG    AAATACCACAGTTTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520078

TAATTTTTTGGGCAAATTTCGGTCACCCCCACCCCCCTGAGGTAAGCCCAAATTATGAGAAAGCCCCTCATGTTTGGATAATGACAACCACCCCTTCAACTATGTATTGTCTTACGAAAAAACCTCTCCTTCAGTAGGTAAGTTTGACACCATAAAGGTGGACGTGTAAGACAATACATGGTTGAGGGGGTGGTTGTAATTACCCAAACATGAGGTTTTTTTTTTGTTATTTGAGCATACCTCAGGGGGTGGCCGTAATTTGCCCTAATTTCTT

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