SE3530080

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6298
  • Mimulus guttatus
  • SE3530080
  • hAT
  • Hat6
  • scaffold_2:16690440-16691109
  • CCGGCATG
  • GCATGCAGGGGCGGATCTAG

Secondary structure and sequence

TSD    TIR
5'



3'
CCG  AT    G           ---------    TGGCCAAGTATGCCATGGACCACCCCAAGAAAAGAAAATAAATTTGCCTTAGTGGCAAAGATCTCCAAATTGTTAGATGAGGTCATGAGTTCTACTCCATTATGGTACAAAAAAGTATTGTTTAATTTTTTGTCTAAATTTCTTTTGAGCCCCTCTCCCATAAACACATTATATTATATCTATATTACTATTTAGTCCACCCAAAATTCAAAATATACAAAAAAAGTCCTAACTTTTTTCTTTTTTTTAGTCACTCTCCCCAAAAAAAAATTATATTATATCTATATTATTATTTAGTCCACC
   GC  GCAG GGCGGATCTAG         GGGG                                                                                                                                                                                                                                                                                                               
   ||  |||| |||||||||||         ||||                                                                                                                                                                                                                                                                                                               C
   CG  CGTC CCGCCTAGGTC         AGTC                                                                                                                                                                                                                                                                                                               
GTA  GC    A           CTGCTTTTA    CCACACGGCTCAGGTTCTTAAATGACATATCACCTCAATTTAAAAACCCTCAAGCCCCCGTCGCGGGGGCCTTTTTTTAAACTTGGAAAAAAACAACCTATTTAATCCTCTTCCCTTTTTTTTAAGTTTGAAAAAAAAAAAAAAACCTATTTAATCCTCTTCTTTTTTTAACCATGAAAAAAACATATAAAACTTAAAACCCACCTGATTTATTATTATATCTATATTATATTACGCAAAAACCCCTCTCCCCGATTTTTTTGTTCTTTTTTAAATCCTGAAAAAAACATATAAAACTTAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End