SE3530082

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6300
  • Mimulus guttatus
  • SE3530082
  • hAT
  • Hat7
  • scaffold_6:435635-436116
  • CGTGTGAC
  • GTGTGACTAGGGGTGTAAACGAGCCGAGCTCG

Secondary structure and sequence

TSD    TIR
5'



3' 
C  GTG  -            -----       A     CCTTAT    CGAGCTCGAGCTCGAGCTCGCTACAACTATATAAGACTCGAGCTCAAGCTCGAGCTCGACGAGCCTACAATTTTCAGCTCGAGCTCGAGCTCGTTGTGTTTCTAAGGAGCTCGACCTCGAGCTCGTATACCAAACGAGCCCGAGCCCGAGCTCGAGCTCGGCACAACCAAATTTTCATTCAATTAGAAAAGTAATATT
 GT   AC TAGGGGTGTAAA     CGAGCCG GCTCG      TTCG                                                                                                                                                                                                      
 ||   || ||||||||||||     ||||||| |||||      ||||                                                                                                                                                                                                       
 CA   TG ATCCCCACATTT     GCTCGGC CGAGC      TCGA                                                                                                                                                                                                      
   GTG  C            ACTCA       -     ----AC    AGGCCTCGAACGAGCTTTTTTTGAGCATGAACTCAAGCTCGATTGCTCGGGCTCGAAAAGCTTCTCGGCTCGAGCTCGAAGTAAAGTCAATAAGCTGTCGAGCGTTCGGCCGAGCGCGCGAAATGGAAAAAGATATAAAACATTATGTATAATTATTATATATTATTACCTATAATAGTTATTATTTATTTTTTATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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